Section: New Software and Platforms

Mimoza

Keywords: Systems Biology - Bioinformatics - Biotechnology

Functional Description

Mimoza uses metabolic model generalization and cartographic paradigms to allow human experts to explore a metabolic model in a hierarchical manner. The software creates an zoomable representation of a model submitted by the user in SBML format. The most general view represents the compartments of the model, the next view shows the visualization of generalized versions of reactions and metabolites in each compartment , and the most detailed view visualizes the initial model with the generalization-based layout (where similar metabolites and reactions are placed next to each other). The zoomable representation is implemented using the Leaflet JavaScript library for mobile-friendly interactive maps. Users can click on reactions and compounds to see the information about their annotations. The resulting map can be explored on-line, or downloaded in a COMBINE archive.

• Participants: Anna Zhukova and David James Sherman

• Contact: David James Sherman

• URL: http://mimoza.bordeaux.inria.fr/